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PoMaMo Database -
Potato Maps and More

We kindly ask users to consider the PoMaMo citation requests when publishing results derived from the use of PoMaMo.

Search for potato sequences, mapping info, SNPs etc.

PoMaMo maps:

Solanum tuberosum

  Genetic maps (Download):
  Chromosome 1 Chromosome 5 Chromosome 9
  Chromosome 2 Chromosome 6 Chromosome 10
  Chromosome 3 Chromosome 7 Chromosome 11
  Chromosome 4 Chromosome 8 Chromosome 12
 
Physical maps (Chromosome 5):
  BA27c1 BA87d17 BA213c14
  BA47f2 BA122p13 BAC assembly
  BA76o11 BA151m8
 

Solanaceae


  Function maps for pathogen resistance (More info):
  Chromosome 1 Chromosome 5 Chromosome 9
  Chromosome 2 Chromosome 6 Chromosome 10
  Chromosome 3 Chromosome 7 Chromosome 11
  Chromosome 4 Chromosome 8 Chromosome 12

PoMaMo sequences:

Potato BAC sequences
BA111o5 BA122p13
BA132h9 BA151m8
BA213c14 BA27c1
BA47f2 BA76o11
BA87d17 BC136j5
BC93c12 all sequences (one file)

PoMaMo citation requests:

1. When using any information from PoMaMo maps, please cite:
• Meyer S, Nagel A and C Gebhardt (2005) PoMaMo - A comprehensive database for potato genome data. Nucleic Acids Research 33(Database issue):D666-70.
PMID: 15608284

2. When using information from the RFLP map F1848, please cite in addition to Meyer et al.:
• Gebhardt C, Walkemeier B, Henselewski H, Barakat A, Delseny M and K Stueber (2003) Comparative mapping between potato (Solanum tuberosum) and Arabidopsis thaliana reveals structurally conserved domains and ancient duplications in the potato genome. Plant J 34(4):529-41.
PMID: 12753591

3. When using information from the RFLP map BC916.2, please cite in addition to Meyer et al.:
• Gebhardt C, Ritter E, Barone A, Debener T, Walkemeier B, Schachtschabel U, Kaufmann H, Thompson RD, Bonierbale MW, Ganal MW, Tanksley SD and F Salamini (1991) RFLP maps of potato and their alignment with the homeologous tomato genome. Theor Appl Genet 83:49-57.
Springer

4. When using information from the physical maps, please cite in addition to Meyer et al.:
• Ballvora A, Joecker A, Viehoever P, Ishihara H, Paal J, Meksem K, Bruggmann R, Schoof H, Weisshaar B and C Gebhardt (2007) Comparative sequence analysis of Solanum and Arabidopsis in a hot spot for pathogen resistance on potato chromosome V reveals a patchwork of conserved and rapidly evolving genome segments. BMC Genomics 2;8:112.
PMID: 17474978

PoMaMo database schema:


Potato databases:


Potato tools:

  • Satlotyper
  • Tool to infer haplotypes from unphased SNP data of heterzygous polyploid populations.
    Developed by the GabiPD Team in collaboration with the Gebhardt Group.

Potato publications from the GabiPD Team & The Gebhardt Group:

• Gyetvai G, Sønderkær M, Göbel U, Basekow R, Ballvora A, Imhoff M, Kersten B, Nielsen KL and Gebhardt C. (2012) The Transcriptome of Compatible and Incompatible Interactions of Potato (Solanum tuberosum) with Phytophthora infestans Revealed by DeepSAGE Analysis. PLoS ONE 7(2): e31526. doi:10.1371/journal.pone.0031526.
PMID: 22328937

• Pajerowska-Mukhtar K, Stich B, Achenbach U, Ballvora A, Luebeck J, Strahwald J,Tacke E, Hofferbert HR, Ilarionova E, Bellin D, Walkemeier B, Basekow R, Kersten B and C Gebhardt (2009) Single nucleotide polymorphisms in the allene oxide synthase 2 gene are associated with field resistance to late blight in populations of tetraploid potato cultivars. Genetics 181(3):1115-27.
PMID: 19139145

• Achenbach U, Paulo J, Ilarionova E, Luebeck J, Strahwald J, Tacke E, Hofferbert HR and C Gebhardt (2009) Using SNP markers to dissect linkage disequilibrium at a major quantitative trait locus for resistance to the potato cyst nematode Globodera pallida on potato chromosome V. Theor Appl Genet 118(3):619-29.
PMID: 19020852

• Turrà D, Bellin D, Lorito M and C Gebhardt (2009) Genotype-dependent expression of specific members of potato protease inhibitor gene families in different tissues and in response to wounding and nematode infection. J Plant Physiol. 166(7):762-74.
PMID: 19095329


• Pajerowska-Mukhtar KM, Mukhtar MS, Guex N, Halim VA, Rosahl S, Somssich IE and C Gebhardt (2008) Natural variation of potato allene oxide synthase 2 causes differential levels of jasmonates and pathogen resistance in Arabidopsis. Planta 228(2):293-306.
PMID: 18431595


• Neigenfind J, Gyetvai G, Basekow R, Diehl S, Achenbach U, Gebhardt C, Selbig J and B Kersten (2008) Haplotype inference from unphased SNP data in heterozygous polyploids based on SAT. BMC Genomics 30;9:356.
PMID: 18667059

• Li L, Paulo MJ, Strahwald J, Lübeck J, Hofferbert HR, Tacke E, Junghans H, Wunder J, Draffehn A, van Eeuwijk F and C Gebhardt (2008) Natural DNA variation at candidate loci is associated with potato chip color, tuber starch content, yield and starch yield. Theor Appl Genet.
PMID: 18379755


• Szajko K, Chrzanowska M, Witek K, Strzelczyk-Zyta D, Zagórska H, Gebhardt C, Hennig J and W Marczewski (2008) The novel gene Ny-1 on potato chromosome IX confers hypersensitive resistance to Potato virus Y and is an alternative to Ry genes in potato breeding for PVY resistance. Theor Appl Genet. 116(2):297-303.
PMID: 17985110


• Ballvora A, Joecker A, Viehoever P, Ishihara H, Paal J, Meksem K, Bruggmann R, Schoof H, Weisshaar B and C Gebhardt (2007) Comparative sequence analysis of Solanum and Arabidopsis in a hot spot for pathogen resistance on potato chromosome V reveals a patchwork of conserved and rapidly evolving genome segments. BMC Genomics 2;8:112.
PMID: 17474978

• Sliwka J, Jakuczun H, Lebecka R, Marczewski W, Gebhardt C and E Zimnoch-Guzowska (2007) Tagging QTLs for late blight resistance and plant maturity from diploid wild relatives in a cultivated potato (Solanum tuberosum) background. Theor Appl Genet. 115(1):101-12.
PMID: 17468842

• Sliwka J, Jakuczun H, Lebecka R, Marczewski W, Gebhardt C and E Zimnoch-Guzowska (2006) The novel, major locus Rpi-phu1 for late blight resistance maps to potato chromosome IX and is not correlated with long vegetation period. Theor Appl Genet. 113(4):685-95. PubMed PMID: 16835764.

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